Flatpaks Won't Run after Fedora 43 Upgrade

I upgraded to F43 using DNF System Plugin. After which some of my previously installed flatpaks will not run with the error:

bwrap: Can't mkdir parents for /home/rkroeker/.var/app/${app-name}/config/user-dirs.dirs: No such file or directory

(where ${app-name} is replaced with the literal application name). Unfortunately I didn’t check what versions of the runtime existed before the upgrade. I’m running 1.16.1 right now.

They are ‘system’ installed (vs user) and I’ve attempted to reinstall them both at system and user scope. What are my next steps here?