Why can’t i get grub-customizer from flatpak
Grub-customizer from flathub
Because it was not published to Flathub.
Check if your distributions packages provides it.
Also: Editing the GRUB configuration can, if done careless, break the system boot process, making for a difficult repair process.
So, even if using a tool to ease the editing of the configuration, you should really understand the changes being done before changing anything there.