Flatpak repair does not complete it seems

I am trying to resolve my issue at:

and I discovered I can do:

flatpak repair

When I run this I get:

Working on the system installation at /var/lib/flatpak
[72/145] Verifying flathub:runtime/org.kde.WaylandDecoration.QAdwaitaDecorations/x86_64/5.15-22.08…
Checking remotes…

And then it ends.

So it seems that it stopped doing a repair check at 72/145…

After doing the above repair command, this did not resolve my issues.

Is there anything I can do to have it do a full repair?

Just to explain my issue a bit more - I have GUI display issues with most of my flatpak apps, eg this is what Eyedropper looks like:

Screenshot from 2023-12-18 17-40-54

This is what it used to look like:

Any help is appreciated…